| Scientific Name | Author | English Name |
|---|---|---|
| Apocryptes bato | (Hamilton, 1822) | |
| Apocryptodon madurensis | (Bleeker, 1849) | Madura goby |
| Apocryptodon punctatus | Tomiyama, 1934 | |
| Boleophthalmus birdsongi | Murdy, 1989 | Birdsong's mudskipper |
| Boleophthalmus boddarti | (Pallas, 1770) | Boddart's goggle-eyed goby |
| Boleophthalmus caeruleomaculatus | McCulloch & Waite, 1918 | Bluespotted mudskipper |
| Boleophthalmus dussumieri | Valenciennes, 1837 | |
| Boleophthalmus pectinirostris | (Linnaeus, 1758) | Great blue spotted mudskipper |
| Boleophthalmus poti | Polgar, Jaafar & Konstantinidis, 2013 | |
| Oxuderces dentatus | Eydoux & Souleyet, 1850 | |
| Oxuderces wirzi | (Koumans, 1937) | Wirz's goby |
| Parapocryptes rictuosus | (Valenciennes, 1837) | |
| Parapocryptes serperaster | (Richardson, 1846) | |
| Periophthalmodon freycineti | (Quoy & Gaimard, 1824) | Pug-headed mudskipper |
| Periophthalmodon schlosseri | (Pallas, 1770) | Giant mudskipper |
| Periophthalmodon septemradiatus | (Hamilton, 1822) | |
| Periophthalmus argentilineatus | Valenciennes, 1837 | Barred mudskipper |
| Periophthalmus barbarus | (Linnaeus, 1766) | Atlantic mudskipper |
| Periophthalmus chrysospilos | Bleeker, 1853 | |
| Periophthalmus darwini | Larson & Takita, 2004 | Darwin's mudskipper |
| Periophthalmus gracilis | Eggert, 1935 | Graceful mudskipper |
| Periophthalmus kalolo | Lesson, 1831 | Common mudskipper |
| Periophthalmus magnuspinnatus | Lee, Choi & Ryu, 1995 | |
| Periophthalmus malaccensis | Eggert, 1935 | |
| Periophthalmus minutus | Eggert, 1935 | Minute mudskipper |
| Periophthalmus modestus | Cantor, 1842 | Shuttles hoppfish |
| Periophthalmus novaeguineaensis | Eggert, 1935 | New Guinea mudskipper |
| Periophthalmus novemradiatus | (Hamilton, 1822) | Pearse's mudskipper |
| Periophthalmus pusing | Jaafar, Polgar & Zamroni, 2016 | |
| Periophthalmus spilotus | Murdy & Takita, 1999 | |
| Periophthalmus takita | Jaafar & Larson, 2008 | Takita's mudskipper |
| Periophthalmus variabilis | Eggert, 1935 | |
| Periophthalmus walailakae | Darumas & Tantichodok, 2002 | |
| Periophthalmus waltoni | Koumans, 1941 | Walton's mudskipper |
| Periophthalmus weberi | Eggert, 1935 | Weber's mudskipper |
| Pseudapocryptes borneensis | (Bleeker, 1855) | |
| Pseudapocryptes elongatus | (Cuvier, 1816) | |
| Scartelaos cantoris | (Day, 1871) | |
| Scartelaos gigas | Chu & Wu, 1963 | |
| Scartelaos histophorus | (Valenciennes, 1837) | Walking goby |
| Scartelaos tenuis | (Day, 1876) | Indian Ocean slender mudskipper |
| Zappa confluentus | (Roberts, 1978) | Slender mudskipper |