| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 4690 |
| Andaman Sea | Sea/Bay/Gulf | native | 5736 |
| Arabian Sea | Sea/Bay/Gulf | native | 4690 |
| Bay of Bengal | Sea/Bay/Gulf | native | 4690 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 48497 |
| East China Sea | Sea/Bay/Gulf | native | 47843 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 48497 |
| Gulf of Oman | Sea/Bay/Gulf | native | 47533 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 1632 |
| Indian Ocean | Sea/Bay/Gulf | native | 33390 |
| Indonesian Sea | Sea/Bay/Gulf | native | 4313 |
| Lingayen Gulf | Sea/Bay/Gulf | native | 43020 |
| North Australian Shelf | Sea/Bay/Gulf | native | 4690 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 4690 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 4690 |
| Ormoc Bay | Sea/Bay/Gulf | native | 45205 |
| Pacific Ocean | Sea/Bay/Gulf | native | 4690 |
| Persian Gulf | Sea/Bay/Gulf | native | 47533 |
| Red Sea | Sea/Bay/Gulf | native | 12541 |
| Samar Sea | Sea/Bay/Gulf | native | 29039 |
| San Miguel Bay | Sea/Bay/Gulf | native | 45674 |
| San Pedro Bay | Sea/Bay/Gulf | native | 46241 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 4690 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern China | Sea/Bay/Gulf | native | 94637 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 4690 |
| Tubbataha Reefs | Sea/Bay/Gulf | native | 53416 |
| Yellow Sea | Sea/Bay/Gulf | native | 4868 |