| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 5213 |
| Andaman Sea | Sea/Bay/Gulf | native | 2115 |
| Arabian Sea | Sea/Bay/Gulf | native | 3507 |
| Bay of Bengal | Sea/Bay/Gulf | native | 2115 |
| Chilika Lake/Lagoon | Lagoon | native | 29108 |
| East China Sea | Sea/Bay/Gulf | native | 47843 |
| Erhjen River | River (basin) | native | 36073 |
| Gulf of Aden | Sea/Bay/Gulf | native | 3507 |
| Gulf of Aqaba | Sea/Bay/Gulf | native | 58021 |
| Gulf of Oman | Sea/Bay/Gulf | native | 3507 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 2115 |
| Indian Ocean | Sea/Bay/Gulf | native | 4335 |
| Indonesian Sea | Sea/Bay/Gulf | native | 2115 |
| North Australian Shelf | Sea/Bay/Gulf | native | 1724 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 1724 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 1724 |
| Pacific Ocean | Sea/Bay/Gulf | native | 1724 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| Persian Gulf | Sea/Bay/Gulf | native | 92948 |
| Red Sea | Sea/Bay/Gulf | native | 84159 |
| Ruerhmen River | River (basin) | native | 36073 |
| Shark Bay | Sea/Bay/Gulf | native | 115321 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 3507 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern China | Sea/Bay/Gulf | native | 119494 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 393 |
| West Central Australian Shelf | Sea/Bay/Gulf | native | 115321 |
| Yellow Sea | Sea/Bay/Gulf | native | 1724 |