| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 189 |
| Andaman Sea | Sea/Bay/Gulf | native | 189 |
| Arabian Sea | Sea/Bay/Gulf | native | 189 |
| Bay of Bengal | Sea/Bay/Gulf | native | 189 |
| Carigara Bay | Sea/Bay/Gulf | native | 46323 |
| Chilika Lake/Lagoon | Lagoon | native | 29108 |
| Davao Gulf | Sea/Bay/Gulf | native | 43437 |
| East China Sea | Sea/Bay/Gulf | native | 47843 |
| Gulf of Aden | Sea/Bay/Gulf | native | 189 |
| Gulf of Oman | Sea/Bay/Gulf | native | 189 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 189 |
| Indian Ocean | Sea/Bay/Gulf | native | 189 |
| Indonesian Sea | Sea/Bay/Gulf | native | 189 |
| Lagonoy Gulf | Sea/Bay/Gulf | native | 43283 |
| Leyte Gulf | Sea/Bay/Gulf | native | 31411 |
| Lingayen Gulf | Sea/Bay/Gulf | native | 43020 |
| Manila Bay | Sea/Bay/Gulf | native | 2023 |
| North Australian Shelf | Sea/Bay/Gulf | native | 7300 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 7300 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 7300 |
| Pacific Ocean | Sea/Bay/Gulf | native | 7300 |
| Pangani | River (basin) | misidentification | 123745 |
| Panguil Bay | Sea/Bay/Gulf | native | 47626 |
| Ragay Gulf | Sea/Bay/Gulf | native | 47919 |
| Ruvu | River (basin) | misidentification | 123745 |
| Samar Sea | Sea/Bay/Gulf | native | 29039 |
| San Miguel Bay | Sea/Bay/Gulf | native | 43275 |
| San Pedro Bay | Sea/Bay/Gulf | native | 46241 |
| Sikao Creek | River (basin) | native | 52823 |
| Sogod Bay | Sea/Bay/Gulf | native | 46392 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 189 |
| Sorsogon Bay | Sea/Bay/Gulf | native | 47531 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern China | Sea/Bay/Gulf | native | 119713 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 280 |
| Tayabas Bay | Sea/Bay/Gulf | native | 47573 |